Contents: Preface. 1. Introduction. 2.
Building biological databases with MySQL. 3.
Automating processes using Perl. 4.
Numerical data analysis using R. 5.
Programming for the web. Appendix: Using command line interfaces.
Index. "Modern bioinformatics encompasses a broad and ever changing range of activities involved with the management and analysis of data from molecular biology experiments.
Despite the diversity of activities and applications, the basic methodology and core tools needed to tackle bio-informatics problems is common to many projects. Building Bioinformatics Solutions provides a comprehensive introduction to this methodology, explaining how to acquire and use the most popular development tools, how to apply them to build processing pipelines, and how to make the results available through visualisations and web-based services for deployment either locally or via the internet.
The main development tools covered in this book are the MySQL database management system, the Perl programming language, and the R language for statistical computing. These industry standard
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